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Packages that use SignedPermutation | |
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baobab.bio.permutation |
Uses of SignedPermutation in baobab.bio.permutation |
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Subclasses of SignedPermutation in baobab.bio.permutation | |
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class |
ComplexSignedPermutation
The ComplexSignedPermutation class represents a signed permutation (the ComplexSignedPermutation class deals with hurdles) |
Methods in baobab.bio.permutation that return SignedPermutation | |
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static SignedPermutation |
RandomPermutation.createRandomSignedPermutation(int permutationSize,
int reversalDistance,
boolean isLinear,
long seed)
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static SignedPermutation |
RandomPermutation.createRandomSignedPermutation(int permutationSize,
int reversalDistance,
long seed)
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SignedPermutation |
SignedPermutationReversalFilter.getPermutation()
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SignedPermutation |
ComplexSignedPermutation.revert(int start,
int end)
Reverts the permutation between the specified positions |
SignedPermutation |
SignedPermutation.revert(int start,
int end)
Reverts the permutation between the specified positions |
SignedPermutation |
ComplexSignedPermutation.revert(Point start,
Point end)
Reverts the permutation between the specified points |
SignedPermutation |
SignedPermutation.revert(Point start,
Point end)
Reverts the permutation between the specified points |
SignedPermutation |
ComplexSignedPermutation.revert(ReversalBlock block)
Reverts the specified block of the permutation |
SignedPermutation |
SignedPermutation.revert(ReversalBlock block)
Reverts the specified block of the permutation |
SignedPermutation |
SignedPermutation.revertToNewPermutation(int start,
int end)
Make a new permutation, by reverting the permutation between the specified positions |
SignedPermutation |
ComplexSignedPermutation.revertToNewPermutation(Point start,
Point end)
Make a new permutation, by reverting the permutation between the specified positions |
SignedPermutation |
SignedPermutation.revertToNewPermutation(Point start,
Point end)
Make a new permutation, by reverting the permutation between the specified positions |
Methods in baobab.bio.permutation with parameters of type SignedPermutation | |
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boolean |
SignedPermutation.equals(SignedPermutation perm)
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Constructors in baobab.bio.permutation with parameters of type SignedPermutation | |
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SignedReversalBlock(SignedPermutation permutation,
int start,
int end)
Creates a new block |
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SignedReversalBlock(SignedPermutation permutation,
Point start,
Point end)
Creates a new block |
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