Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
W
I
incrementDebugNumberOfElements()
- Method in class baobab.trace.
Trace
incrementOccurrences(long)
- Method in class baobab.trace.
Trace
Increments the number of this trace
intersects(byte[], byte[])
- Static method in class baobab.trace.
TraceUtil
intersects(BitList, BitList)
- Static method in class baobab.trace.
TraceUtil
isActive()
- Method in class baobab.bio.permutation.
Cycle
Tests whether this cycle is active (analyzed)
isAdjacency()
- Method in class baobab.bio.permutation.
Point
Tests whether this point is an adjacency
isAdjacency()
- Method in class baobab.bio.permutation.
ReversalBlock
Tests whether this block is an adjacency
isAdjacency()
- Method in class baobab.bio.permutation.
SignedComponent
Tests whether this component is an adjacency
isAdjacency()
- Method in class baobab.bio.permutation.
SignedPermutation
Tests whether this permutation is sorted
isAdjacency()
- Method in class baobab.bio.permutation.
UnsignedPermutation
Tests whether this permutation is sorted
isAnalyzed()
- Method in class baobab.bio.permutation.
Point
Tests whether this point is already analyzed (belongs to an active cycle)
isEmpty()
- Method in class baobab.bio.permutation.
CyclePartition
Tests whether this cycle partition is empty
isEmpty()
- Method in class baobab.trace.
Trace
isFortress()
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
Tests whether this permutation is a fortress
isHurdle()
- Method in class baobab.bio.permutation.
SignedComponent
Tests whether this component is a hurdle
isLinear()
- Method in interface baobab.bio.permutation.
Permutation
Tests whether the permutation is linear or circular
isLinear()
- Method in class baobab.bio.permutation.
SignedPermutation
Tests whether the permutation is linear or circular
isLinear()
- Method in class baobab.bio.permutation.
UnsignedPermutation
Tests whether the permutation is linear or circular
isMaxHurdle()
- Method in class baobab.bio.permutation.
SignedComponent
Tests whether this component is the maximum hurdle
isNeighborOf(Point)
- Method in class baobab.bio.permutation.
Point
Tests whether this point is a neighbor of a given point
isOriented()
- Method in class baobab.bio.permutation.
SignedCycle
Tests whether this block is oriented
isRevertedAt(int)
- Method in interface baobab.bio.permutation.
Permutation
Gets the value of the element located at a specified position of the permutation
isRevertedAt(int)
- Method in class baobab.bio.permutation.
SignedPermutation
Gets the value of the element located at a specified position of the permutation
isRevertedAt(int)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Gets the value of the element located at a specified position of the permutation
isSorted()
- Method in interface baobab.bio.permutation.
Permutation
isSorted()
- Method in class baobab.bio.permutation.
SignedPermutation
Tests whether this permutation is sorted
isSorted()
- Method in class baobab.bio.permutation.
UnsignedPermutation
Tests whether this permutation is sorted
isSuperHurdle()
- Method in class baobab.bio.permutation.
SignedComponent
Tests whether this component is a super hurdle
isValidPermutation(int[], boolean)
- Static method in class baobab.bio.permutation.
PermutationUtil
Tests whether the permutation is valid
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
W