Uses of Package
baobab.bio.permutation

Packages that use baobab.bio.permutation
baobab.bio.permutation   
 

Classes in baobab.bio.permutation used by baobab.bio.permutation
ComplexSignedPermutation
          The ComplexSignedPermutation class represents a signed permutation (the ComplexSignedPermutation class deals with hurdles)
Cycle
          The Cycle class represents a cycle of points of a permutation
CyclePartition
          The CyclePartition class represents a partition of a cycle of a permutation
Permutation
          The Permutation interface represents a general permutation
PermutationException
          The PermutationException class represents an exception on permutation dealing
PermutationFormatter
          The PermutationFormatter class transforms a permutation to formatted strings
Point
          The Point class represents a point between two values of a permutation
ReversalBlock
          The ReversalBlock class represents an elementary block of a permutation, given by its start and end points, which can be used as the breakpoints of a reversal
SignedComponent
          The SignedComponent class represents a component of signed cycles of a signed permutation
SignedPermutation
          The SignedPermutation class represents a signed permutation (the SignedPermutation class does not deal with hurdles)
SignedPermutationReversalFilter
          The SignedPermutationReversalFilter filters valid reversal blocks for a SignedPermutation
SignedReversalBlock
          The SignedReversalBlock class represents an elementary block of a signed permutation, given by its start and end points, which can be used as the breakpoints of a signed reversal
UnsignedPermutation
          The UnsignedPermutation class represents an unsigned permutation