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Classes in baobab.bio.permutation used by baobab.bio.permutation | |
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ComplexSignedPermutation
The ComplexSignedPermutation class represents a signed permutation and its breakpoint graph (the ComplexSignedPermutation class deals with hurdles) |
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Cycle
The Cycle class represents a cycle of points of the breakpoint graph of a permutation |
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CyclePartition
The CyclePartition class represents a partition of a cycle of the breakpoint graph of a permutation Each cycle for a signed permutation has two partitions. |
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Permutation
The Permutation interface represents a general permutation |
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PermutationException
The PermutationException class represents an exception on permutation dealing |
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PermutationFormatter
The PermutationFormatter class transforms a permutation to formatted strings |
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Point
The Point class represents a point between two values of a permutation |
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ReversalBlock
The ReversalBlock class represents an elementary block of a permutation, given by its start and end points, which can be used as the breakpoints of a reversal |
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SignedComponent
The SignedComponent class represents a component of signed cycles of a signed permutation |
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SignedPermutation
The SignedPermutation class represents a signed permutation and its brekpoint graph (the SignedPermutation class does not deal with hurdles) |
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SignedPermutationReversalFilter
The SignedPermutationReversalFilter filters valid reversal blocks for a SignedPermutation |
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SignedReversalBlock
The SignedReversalBlock class represents an elementary block of a signed permutation, given by its start and end points, which can be used as the breakpoints of a signed reversal |
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UnsignedPermutation
The UnsignedPermutation class represents an unsigned permutation and its breakpoint graph |
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