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setSuperHurdle()
- Method in class baobab.bio.permutation.
SignedComponent
Sets this component as super hurdle
SignedComponent
- Class in
baobab.bio.permutation
The SignedComponent class represents a component of signed cycles of a signed permutation
SignedCycle
- Class in
baobab.bio.permutation
The SignedCycle class represents a cycle of points of the breakpoint graph of a signed permutation
SignedPermutation
- Class in
baobab.bio.permutation
The SignedPermutation class represents a signed permutation and its brekpoint graph (the SignedPermutation class does not deal with hurdles)
SignedPermutation(int[])
- Constructor for class baobab.bio.permutation.
SignedPermutation
Creates a new linear permutation (assumes the identity permutation as target)
SignedPermutation(int[], boolean)
- Constructor for class baobab.bio.permutation.
SignedPermutation
Creates a new permutation (assumes the identity permutation as target)
SignedPermutation(int[], int[])
- Constructor for class baobab.bio.permutation.
SignedPermutation
Creates a new linear permutation
SignedPermutation(int[], int[], boolean)
- Constructor for class baobab.bio.permutation.
SignedPermutation
Creates a new permutation
SignedPermutationReversalFilter
- Class in
baobab.bio.permutation
The SignedPermutationReversalFilter filters valid reversal blocks for a SignedPermutation
SignedReversalBlock
- Class in
baobab.bio.permutation
The SignedReversalBlock class represents an elementary block of a signed permutation, given by its start and end points, which can be used as the breakpoints of a signed reversal
SignedReversalBlock(SignedPermutation, Point, Point)
- Constructor for class baobab.bio.permutation.
SignedReversalBlock
Creates a new block
SignedReversalBlock(SignedPermutation, int, int)
- Constructor for class baobab.bio.permutation.
SignedReversalBlock
Creates a new block
size()
- Method in class baobab.bio.permutation.
Cycle
Gets the number of points in this cycle
size()
- Method in class baobab.bio.permutation.
CyclePartition
Gets the size (number of points) of this partition
size()
- Method in interface baobab.bio.permutation.
Permutation
size()
- Method in class baobab.bio.permutation.
SignedPermutation
Gets the size (or the number of elements) of the permutation
size()
- Method in class baobab.bio.permutation.
UnsignedPermutation
Gets the size (or the number of elements) of the permutation
SPLIT_CYCLE
- Static variable in class baobab.bio.permutation.
SignedReversalBlock
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