Uses of Interface
baobab.bio.permutation.Permutation

Uses of Permutation in baobab.bio.permutation
 

Classes in baobab.bio.permutation that implement Permutation
 class ComplexSignedPermutation
          The ComplexSignedPermutation class represents a signed permutation and its breakpoint graph (the ComplexSignedPermutation class deals with hurdles)
 class SignedPermutation
          The SignedPermutation class represents a signed permutation and its brekpoint graph (the SignedPermutation class does not deal with hurdles)
 class UnsignedPermutation
          The UnsignedPermutation class represents an unsigned permutation and its breakpoint graph
 

Methods in baobab.bio.permutation that return Permutation
 Permutation SignedPermutation.getPermutation()
          Gets this permutation
 Permutation UnsignedPermutation.getPermutation()
          Gets this permutation
 Permutation PermutationFormatter.getPermutation()
           
 

Constructors in baobab.bio.permutation with parameters of type Permutation
ReversalBlock(Permutation permutation, int start, int end)
          Creates a new block
ReversalBlock(Permutation permutation, Point start, Point end)
          Creates a new block