Uses of Class
baobab.bio.permutation.ComplexSignedPermutationBPGraph

Packages that use ComplexSignedPermutationBPGraph
baobab.applogic.trace   
baobab.bio.permutation   
 

Uses of ComplexSignedPermutationBPGraph in baobab.applogic.trace
 

Methods in baobab.applogic.trace with parameters of type ComplexSignedPermutationBPGraph
 TraceSortedSet TraceAppLogicUtil.analyzeDecomposedTraces(ComplexSignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, java.lang.String thisWorkDir, int[] decompose, int maxNonPerfectReversalScore, boolean doProgressiveDetection, TerminusSymmetryReversalConstraint symmetry)
           
 

Uses of ComplexSignedPermutationBPGraph in baobab.bio.permutation
 

Methods in baobab.bio.permutation that return types with arguments of type ComplexSignedPermutationBPGraph
 java.util.TreeSet<ComplexSignedPermutationBPGraph> ComplexSignedPermutationBPGraph.decompose()
          Decompose this graph in its components + adajacencies to replace other components
 

Methods in baobab.bio.permutation with parameters of type ComplexSignedPermutationBPGraph
 boolean ComplexSignedPermutationBPGraph.equals(ComplexSignedPermutationBPGraph perm)