baobab.exec.permutation
Class collapsePermutation

java.lang.Object
  extended by baobab.exec.permutation.collapsePermutation

public class collapsePermutation
extends java.lang.Object

Collapses a permutation breakpoint graph, eliminating its adjacencies. When the parameter "-m T" is set, only ajacencies in the same DNA strand are eliminated.

To get help, run the program without parameters.

Author:
Marilia Dias Vieira Braga

Constructor Summary
collapsePermutation()
           
 
Method Summary
static void main(java.lang.String[] argv)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

collapsePermutation

public collapsePermutation()
Method Detail

main

public static void main(java.lang.String[] argv)