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F

FastaUtil - Class in baobab.bio.util
 
FastaUtil() - Constructor for class baobab.bio.util.FastaUtil
 
findColinearBlocks - Class in baobab.exec.permutation.colinearity
 
findColinearBlocks() - Constructor for class baobab.exec.permutation.colinearity.findColinearBlocks
 
findMaxMinStrataSolution - Class in baobab.exec.permutation
 
findMaxMinStrataSolution() - Constructor for class baobab.exec.permutation.findMaxMinStrataSolution
 
findStrataSolution - Class in baobab.exec.permutation
 
findStrataSolution() - Constructor for class baobab.exec.permutation.findStrataSolution
 
findStrataSolutions - Class in baobab.exec.permutation
 
findStrataSolutions() - Constructor for class baobab.exec.permutation.findStrataSolutions
 
findStrictColinearBlocks - Class in baobab.exec.permutation.colinearity
 
findStrictColinearBlocks() - Constructor for class baobab.exec.permutation.colinearity.findStrictColinearBlocks
 
first() - Method in class baobab.bio.permutation.colinearity.LinkPermutationToColinearBlock
 
firstElement() - Method in class baobab.util.CompressibleSortedSet
Gets the first element in this set
firstElement() - Method in class baobab.util.FreezableCompressibleSortedSet
Gets the first element in this set
firstPoint() - Method in class baobab.bio.permutation.BPGraphCyclePartition
 
firstPosition() - Method in class baobab.bio.permutation.strata.Strata
 
flushLastDecompressionResult() - Method in class baobab.util.CompressibleSortedSet
Gets the number of elements that have been added/removed to this set after the last internal (partial) decompression and batch processing.
FreezableCompressibleSortedSet<T> - Class in baobab.util
The FreezableCompressibleSortedSet class represents a compressible set of codable elements The intern organization of this set allows partial and global freezing of its data.
FreezableCompressibleSortedSet(Coder<T>, boolean, int, int, int) - Constructor for class baobab.util.FreezableCompressibleSortedSet
 
FreezableCompressibleSortedSet(Coder<T>, boolean) - Constructor for class baobab.util.FreezableCompressibleSortedSet
 
FreezableCompressibleSortedSet(Comparator<T>, Coder<T>, boolean) - Constructor for class baobab.util.FreezableCompressibleSortedSet
 
FreezableCompressibleSortedSet(Comparator<T>, Coder<T>, boolean, int, int, int) - Constructor for class baobab.util.FreezableCompressibleSortedSet
 
freeze() - Method in class baobab.util.FreezableCompressibleSortedSet
 
freeze(boolean) - Method in class baobab.util.FreezableCompressibleSortedSet
 
freezeAfterElement(T) - Method in class baobab.util.FreezableCompressibleSortedSet
 
freezeAfterElement(T, boolean) - Method in class baobab.util.FreezableCompressibleSortedSet
 
freezeUntilElement(T) - Method in class baobab.util.FreezableCompressibleSortedSet
 
freezeUntilElement(T, boolean) - Method in class baobab.util.FreezableCompressibleSortedSet
 
freezeUntilHeight(int, boolean) - Method in class baobab.trace.TraceSortedSet
 

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