A B C D E F G H I J K L M N O P Q R S T U V W

E

enumerateStrata(SignedPermutationBPGraph, int, int) - Method in class baobab.applogic.strata.StrataAppLogicUtil
 
enumerateStrataTraces - Class in baobab.exec.trace
 
enumerateStrataTraces() - Constructor for class baobab.exec.trace.enumerateStrataTraces
 
enumerateTraces(SignedPermutationBPGraph, int, int, int, int, int[]) - Method in class baobab.applogic.trace.TraceAppLogicUtil
 
enumerateTraces - Class in baobab.exec.trace
Enumerates all the traces (classes of solutions) of sorting a signed permutation (or genome) into another, by enumerating all solutions.
enumerateTraces() - Constructor for class baobab.exec.trace.enumerateTraces
 
enumerateTracesByStrata(SignedPermutationBPGraph, int, int, Vector<int[]>, int[], boolean) - Method in class baobab.applogic.trace.TraceAppLogicUtil
 
enumerateTracesByStrata - Class in baobab.exec.trace
 
enumerateTracesByStrata() - Constructor for class baobab.exec.trace.enumerateTracesByStrata
 
enumerateTracesByStrataForRandomPermutations - Class in baobab.exec.trace
 
enumerateTracesByStrataForRandomPermutations() - Constructor for class baobab.exec.trace.enumerateTracesByStrataForRandomPermutations
 
enumerateTracesByStrataForRandomStratifiedPermutations - Class in baobab.exec.trace
 
enumerateTracesByStrataForRandomStratifiedPermutations() - Constructor for class baobab.exec.trace.enumerateTracesByStrataForRandomStratifiedPermutations
 
enumerateTracesByStrataForTrulyRandomStratifiedPermutations - Class in baobab.exec.trace
 
enumerateTracesByStrataForTrulyRandomStratifiedPermutations() - Constructor for class baobab.exec.trace.enumerateTracesByStrataForTrulyRandomStratifiedPermutations
 
equals(ComplexSignedPermutationBPGraph) - Method in class baobab.bio.permutation.ComplexSignedPermutationBPGraph
 
equals(SignedPermutationBPGraph) - Method in class baobab.bio.permutation.SignedPermutationBPGraph
 
equals(Object) - Method in class baobab.bio.permutation.strata.Strata
 
equals(UnsignedPermutationBPGraph) - Method in class baobab.bio.permutation.UnsignedPermutationBPGraph
 
equals(Object) - Method in class baobab.util.BitList
 
evaluateRandomPermutations - Class in baobab.exec.permutation
 
evaluateRandomPermutations() - Constructor for class baobab.exec.permutation.evaluateRandomPermutations
 
ExecUtil - Class in baobab.exec
 
ExecUtil() - Constructor for class baobab.exec.ExecUtil
 
expand(byte[]) - Static method in class baobab.util.ByteSetUtil
 
EXTERNAL_REVERSAL - Static variable in class baobab.bio.permutation.TerminusSymmetryReversalConstraint
 

A B C D E F G H I J K L M N O P Q R S T U V W