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enumerateStrata(SignedPermutationBPGraph, int, int)
- Method in class baobab.applogic.strata.
StrataAppLogicUtil
enumerateStrataTraces
- Class in
baobab.exec.trace
enumerateStrataTraces()
- Constructor for class baobab.exec.trace.
enumerateStrataTraces
enumerateTraces(SignedPermutationBPGraph, int, int, int, int, int[])
- Method in class baobab.applogic.trace.
TraceAppLogicUtil
enumerateTraces
- Class in
baobab.exec.trace
Enumerates all the traces (classes of solutions) of sorting a signed permutation (or genome) into another, by enumerating all solutions.
enumerateTraces()
- Constructor for class baobab.exec.trace.
enumerateTraces
enumerateTracesByStrata(SignedPermutationBPGraph, int, int, Vector<int[]>, int[], boolean)
- Method in class baobab.applogic.trace.
TraceAppLogicUtil
enumerateTracesByStrata
- Class in
baobab.exec.trace
enumerateTracesByStrata()
- Constructor for class baobab.exec.trace.
enumerateTracesByStrata
enumerateTracesByStrataForRandomPermutations
- Class in
baobab.exec.trace
enumerateTracesByStrataForRandomPermutations()
- Constructor for class baobab.exec.trace.
enumerateTracesByStrataForRandomPermutations
enumerateTracesByStrataForRandomStratifiedPermutations
- Class in
baobab.exec.trace
enumerateTracesByStrataForRandomStratifiedPermutations()
- Constructor for class baobab.exec.trace.
enumerateTracesByStrataForRandomStratifiedPermutations
enumerateTracesByStrataForTrulyRandomStratifiedPermutations
- Class in
baobab.exec.trace
enumerateTracesByStrataForTrulyRandomStratifiedPermutations()
- Constructor for class baobab.exec.trace.
enumerateTracesByStrataForTrulyRandomStratifiedPermutations
equals(ComplexSignedPermutationBPGraph)
- Method in class baobab.bio.permutation.
ComplexSignedPermutationBPGraph
equals(SignedPermutationBPGraph)
- Method in class baobab.bio.permutation.
SignedPermutationBPGraph
equals(Object)
- Method in class baobab.bio.permutation.strata.
Strata
equals(UnsignedPermutationBPGraph)
- Method in class baobab.bio.permutation.
UnsignedPermutationBPGraph
equals(Object)
- Method in class baobab.util.
BitList
evaluateRandomPermutations
- Class in
baobab.exec.permutation
evaluateRandomPermutations()
- Constructor for class baobab.exec.permutation.
evaluateRandomPermutations
ExecUtil
- Class in
baobab.exec
ExecUtil()
- Constructor for class baobab.exec.
ExecUtil
expand(byte[])
- Static method in class baobab.util.
ByteSetUtil
EXTERNAL_REVERSAL
- Static variable in class baobab.bio.permutation.
TerminusSymmetryReversalConstraint
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