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FastaUtil
- Class in
baobab.bio.util
FastaUtil()
- Constructor for class baobab.bio.util.
FastaUtil
findColinearBlocks
- Class in
baobab.exec.permutation.colinearity
findColinearBlocks()
- Constructor for class baobab.exec.permutation.colinearity.
findColinearBlocks
findMaxMinStrataSolution
- Class in
baobab.exec.permutation
findMaxMinStrataSolution()
- Constructor for class baobab.exec.permutation.
findMaxMinStrataSolution
findStrataSolution
- Class in
baobab.exec.permutation
findStrataSolution()
- Constructor for class baobab.exec.permutation.
findStrataSolution
findStrataSolutions
- Class in
baobab.exec.permutation
findStrataSolutions()
- Constructor for class baobab.exec.permutation.
findStrataSolutions
findStrictColinearBlocks
- Class in
baobab.exec.permutation.colinearity
findStrictColinearBlocks()
- Constructor for class baobab.exec.permutation.colinearity.
findStrictColinearBlocks
first()
- Method in class baobab.bio.permutation.colinearity.
LinkPermutationToColinearBlock
firstElement()
- Method in class baobab.util.
CompressibleSortedSet
Gets the first element in this set
firstElement()
- Method in class baobab.util.
FreezableCompressibleSortedSet
Gets the first element in this set
firstPoint()
- Method in class baobab.bio.permutation.
BPGraphCyclePartition
firstPosition()
- Method in class baobab.bio.permutation.strata.
Strata
flushLastDecompressionResult()
- Method in class baobab.util.
CompressibleSortedSet
Gets the number of elements that have been added/removed to this set after the last internal (partial) decompression and batch processing.
FreezableCompressibleSortedSet
<
T
> - Class in
baobab.util
The FreezableCompressibleSortedSet class represents a compressible set of codable elements The intern organization of this set allows partial and global freezing of its data.
FreezableCompressibleSortedSet(Coder<T>, boolean, int, int, int)
- Constructor for class baobab.util.
FreezableCompressibleSortedSet
FreezableCompressibleSortedSet(Coder<T>, boolean)
- Constructor for class baobab.util.
FreezableCompressibleSortedSet
FreezableCompressibleSortedSet(Comparator<T>, Coder<T>, boolean)
- Constructor for class baobab.util.
FreezableCompressibleSortedSet
FreezableCompressibleSortedSet(Comparator<T>, Coder<T>, boolean, int, int, int)
- Constructor for class baobab.util.
FreezableCompressibleSortedSet
freeze()
- Method in class baobab.util.
FreezableCompressibleSortedSet
freeze(boolean)
- Method in class baobab.util.
FreezableCompressibleSortedSet
freezeAfterElement(T)
- Method in class baobab.util.
FreezableCompressibleSortedSet
freezeAfterElement(T, boolean)
- Method in class baobab.util.
FreezableCompressibleSortedSet
freezeUntilElement(T)
- Method in class baobab.util.
FreezableCompressibleSortedSet
freezeUntilElement(T, boolean)
- Method in class baobab.util.
FreezableCompressibleSortedSet
freezeUntilHeight(int, boolean)
- Method in class baobab.trace.
TraceSortedSet
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