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unfreeze()
- Method in class baobab.util.
FreezableCompressibleSortedSet
unset(int)
- Method in class baobab.util.
BitList
UnsignedPermutationBPGraph
- Class in
baobab.bio.permutation
The UnsignedPermutationBPGraph class represents an unsigned permutation pair and its breakpoint graph
UnsignedPermutationBPGraph(int[])
- Constructor for class baobab.bio.permutation.
UnsignedPermutationBPGraph
Creates a new linear permutation (assumes the identity permutation as target)
UnsignedPermutationBPGraph(int[], boolean)
- Constructor for class baobab.bio.permutation.
UnsignedPermutationBPGraph
Creates a new permutation (assumes the identity permutation as target)
UnsignedPermutationBPGraph(int[], int[])
- Constructor for class baobab.bio.permutation.
UnsignedPermutationBPGraph
Creates a new linear permutation
UnsignedPermutationBPGraph(int[], int[], boolean)
- Constructor for class baobab.bio.permutation.
UnsignedPermutationBPGraph
Creates a new permutation
UnsignedPermutationBPGraph(Vector<String>, Vector<String>, boolean)
- Constructor for class baobab.bio.permutation.
UnsignedPermutationBPGraph
Creates a new permutation
unsortedToSortedList(int[], int)
- Static method in class baobab.bio.permutation.
IntervalUtil
Generates a BitList from an interval
update(SignedPermutationBPGraph)
- Method in class baobab.bio.permutation.
PerfectReversalConstraint
updateIntervals(int, int[])
- Method in class baobab.bio.permutation.
PerfectReversalConstraint
updateLastCreatedStrata(int)
- Method in class baobab.bio.permutation.
StrataReversalConstraint
updateReversalDistance(int)
- Method in class baobab.bio.permutation.
StrataReversalConstraint
Util
- Class in
baobab.util
Util()
- Constructor for class baobab.util.
Util
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