baobab.bio.permutation
Class PermutationBPGraphIntervalFilter
java.lang.Object
baobab.bio.permutation.PermutationBPGraphIntervalFilter
public class PermutationBPGraphIntervalFilter
- extends java.lang.Object
The PermutationBPGraphIntervalFilter class searchs special kinds of intervals
which are common to the origin and target permutations
- Author:
- Marilia D. V. Braga
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PermutationBPGraphIntervalFilter
public PermutationBPGraphIntervalFilter(PermutationBPGraph permutation)
getPermutation
public PermutationBPGraph getPermutation()
getCommonIntervals
public java.util.TreeSet<BitList> getCommonIntervals(boolean monoorientedIntervals)
getCommonIntervals
public java.util.TreeSet<BitList> getCommonIntervals()
getMonoorientedCommonIntervals
public java.util.TreeSet<BitList> getMonoorientedCommonIntervals()
getInterval
public BitList getInterval(int acceptedNumberOfInsertions,
java.lang.String[] intervalAsListOfNames)
getCoorientedInterval
public BitList getCoorientedInterval(int acceptedNumberOfInsertions,
java.lang.String[] intervalAsListOfNames)