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baobab.bio.* |
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baobab.bio.permutation.PerfectReversalConstraint | ||
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public static final int |
MAX_SCORE_NON_PERFECT_REVERSAL |
2 |
baobab.bio.permutation.ReversalConstraint | ||
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public static final int |
MAX_PRIORITY |
0 |
baobab.bio.permutation.SignedBPGraphReversalBlock | ||
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public static final int |
JOIN_CYCLES |
3 |
public static final int |
KEEP_CYCLE |
2 |
public static final int |
SPLIT_CYCLE |
1 |
baobab.bio.permutation.TerminusSymmetryReversalConstraint | ||
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public static final int |
ASYMMETRIC_REVERSAL |
-1 |
public static final int |
EXTERNAL_REVERSAL |
0 |
public static final int |
SYMMETRIC_REVERSAL |
1 |
baobab.exec.* |
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baobab.exec.trace.computeTracesByReversal | ||
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public static final double |
MIN_SIMILARITY |
0.95 |
baobab.exec.trace.computeTracesByReversalForNonCanonizedPermutations | ||
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public static final double |
MIN_SIMILARITY |
0.95 |
baobab.util.* |
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baobab.util.Bytes | ||
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public static final int |
INT_TO_BYTES |
4 |
public static final int |
LONG_TO_BYTES |
8 |
baobab.util.CompressibleSortedSet<T> | ||
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public static final double |
BLOCK_SPLIT_BALANCE |
0.5 |
public static final int |
MAXIMUM_NUMBER_OF_ELEMENTS_BY_COMPRESSIBLE_BLOCK |
3000 |
public static final int |
MAXIMUM_NUMBER_OF_UNCOMPRESSED_BLOCKS_FOR_AUTOMATIC_COMPRESSION |
400 |
public static final int |
MAXIMUM_PENDING_INSERTION_DELETION_LIST_FOR_COMPRESSED_BLOCK |
200 |
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