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Packages that use BitList | |
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baobab.bio.permutation | |
baobab.trace | |
baobab.util |
Uses of BitList in baobab.bio.permutation |
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Methods in baobab.bio.permutation that return BitList | |
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static BitList |
IntervalUtil.boundariesToList(PermutationBPGraph permutation,
int start,
int end)
Generates a BitList from an interval |
BitList |
PermutationBPGraphIntervalFilter.getCoorientedInterval(int acceptedNumberOfInsertions,
java.lang.String[] intervalAsListOfNames)
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BitList |
PermutationBPGraphIntervalFilter.getInterval(int acceptedNumberOfInsertions,
java.lang.String[] intervalAsListOfNames)
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static BitList |
IntervalUtil.unsortedToSortedList(int[] unsortedSegment,
int permutationSize)
Generates a BitList from an interval |
Methods in baobab.bio.permutation that return types with arguments of type BitList | |
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java.util.TreeSet<BitList> |
PermutationBPGraphIntervalFilter.getCommonIntervals()
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java.util.TreeSet<BitList> |
PermutationBPGraphIntervalFilter.getCommonIntervals(boolean monoorientedIntervals)
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java.util.TreeSet<BitList> |
PerfectReversalConstraint.getIntervals()
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java.util.TreeSet<BitList> |
PermutationBPGraphIntervalFilter.getMonoorientedCommonIntervals()
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Methods in baobab.bio.permutation with parameters of type BitList | |
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static int[] |
IntervalUtil.listToBoundaries(PermutationBPGraph permutation,
BitList segment)
Generates a reversal from a trace element |
Uses of BitList in baobab.trace |
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Methods in baobab.trace that return types with arguments of type BitList | |
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java.util.Vector<BitList> |
Trace.getElementsAsBitLists(int elementSize,
int numberOfElements)
Decode the trace as a Vector of elements (represented as arrays of bytes) |
java.util.Vector<BitList> |
SubTrace.getRepresentativeElementsAsBitLists(int elementSize,
int numberOfElements)
Decode the trace as a Vector of elements (represented as arrays of BitList) |
Methods in baobab.trace with parameters of type BitList | |
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int |
Trace.getHeightOf(BitList element,
int elementSize,
int numberOfElements)
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Method parameters in baobab.trace with type arguments of type BitList | |
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void |
DecomposedTrace.addElements(java.util.Vector<BitList> elements,
int elementSize,
int prevNumberOfElements)
Adds a new element to this trace |
Uses of BitList in baobab.util |
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Methods in baobab.util that return BitList | |
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static BitList |
ByteSetUtil.bytesToBitList(byte[] elementValues,
int nbits)
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BitList |
BitList.get(int start,
int end)
|
BitList |
BitList.get(int start,
int end,
boolean from1)
|
static BitList |
ByteSetUtil.intsToBitList(int[] elementValues,
int nbits)
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Methods in baobab.util with parameters of type BitList | |
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void |
BitList.and(BitList list)
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static byte[] |
ByteSetUtil.bitListToBytes(BitList element)
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static int[] |
ByteSetUtil.bitListToInts(BitList element)
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static int |
BitList.compareBitLists(BitList list1,
BitList list2)
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boolean |
BitList.intersects(BitList list)
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static java.lang.String |
Util.listAsCondensedString(BitList list,
int span,
char sep)
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static java.lang.String |
Util.listAsCondensedString(BitList list,
java.lang.String[] mapIntToName,
char sep,
boolean condenseNames)
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static java.lang.String |
Util.listAsCondensedString(BitList list,
java.lang.String[] mapIntToName,
java.util.Hashtable<java.lang.String,java.util.TreeSet<java.lang.String>> mapNamesToDescriptions,
char sep,
boolean condenseNames)
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void |
BitList.or(BitList list)
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boolean |
BitList.overlaps(BitList other)
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