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WeightedSignedPermutationBPGraph
- Class in
baobab.bio.permutation
The WeightedSignedPermutationBPGraph class represents a weighted signed permutation pair and its breakpoint graph (the WeightedSignedPermutationBPGraph class does not deal with hurdles)
WeightedSignedPermutationBPGraph(int[], double[])
- Constructor for class baobab.bio.permutation.
WeightedSignedPermutationBPGraph
Creates a new linear permutation (assumes the identity permutation as target)
WeightedSignedPermutationBPGraph(int[], boolean, double[])
- Constructor for class baobab.bio.permutation.
WeightedSignedPermutationBPGraph
Creates a new permutation (assumes the identity permutation as target)
WeightedSignedPermutationBPGraph(int[], int[], double[])
- Constructor for class baobab.bio.permutation.
WeightedSignedPermutationBPGraph
Creates a new linear permutation
WeightedSignedPermutationBPGraph(int[], int[], boolean, double[])
- Constructor for class baobab.bio.permutation.
WeightedSignedPermutationBPGraph
Creates a new permutation
WeightedSignedPermutationBPGraph(Vector<String>, Vector<String>, boolean, Vector<Double>)
- Constructor for class baobab.bio.permutation.
WeightedSignedPermutationBPGraph
Creates a new permutation
WeightedSignedPermutationBPGraphReversalFilter
- Class in
baobab.bio.permutation
The WeightedSignedPermutationBPGraphReversalFilter filters valid reversal blocks for a WeightedSignedPermutationBPGraph
WORK_DIR
- Static variable in class baobab.applogic.
AppLogicUtil
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