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RandomPermutation
- Class in
baobab.bio.permutation
RandomPermutation()
- Constructor for class baobab.bio.permutation.
RandomPermutation
randomPermutations
- Class in
baobab.exec.permutation
randomPermutations()
- Constructor for class baobab.exec.permutation.
randomPermutations
readParameters(String[])
- Static method in class baobab.exec.
ExecUtil
ReversalBlock
- Class in
baobab.bio.permutation
The ReversalBlock class represents an elementary block of a permutation, given by its start and end points, which can be used as the breakpoints of a reversal
ReversalBlock(Permutation, Point, Point)
- Constructor for class baobab.bio.permutation.
ReversalBlock
Creates a new block
ReversalBlock(Permutation, int, int)
- Constructor for class baobab.bio.permutation.
ReversalBlock
Creates a new block
ReversalBlockComparator
- Class in
baobab.bio.permutation
The BlockComparator class represents a comparator of two elementary blocks of a signed permutation
ReversalBlockComparator()
- Constructor for class baobab.bio.permutation.
ReversalBlockComparator
reversalToBitTraceElement(Permutation, int, int)
- Static method in class baobab.bio.permutation.
PermutationToTrace
Generates a TraceElement from a reversal
reversalToByteTraceElement(Permutation, int, int)
- Static method in class baobab.bio.permutation.
PermutationToTrace
Generates a TraceElement from a reversal
reversalToCanonizedString(int, int)
- Method in class baobab.bio.permutation.
PermutationFormatter
reversalToUnsignedArrayOfBytes(Permutation, int, int)
- Static method in class baobab.bio.permutation.
PermutationToTrace
revert(ReversalBlock)
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
Reverts the specified block of the permutation
revert(Point, Point)
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
Reverts the permutation between the specified points
revert(int, int)
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
Reverts the permutation between the specified positions
revert(ReversalBlock)
- Method in class baobab.bio.permutation.
SignedPermutation
Reverts the specified block of the permutation
revert(Point, Point)
- Method in class baobab.bio.permutation.
SignedPermutation
Reverts the permutation between the specified points
revert(int, int)
- Method in class baobab.bio.permutation.
SignedPermutation
Reverts the permutation between the specified positions
revert(ReversalBlock)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Reverts the specified block of the permutation
revert(Point, Point)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Reverts the permutation between the specified points
revert(int, int)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Reverts the permutation between the specified positions
revertSigned(int[], int, int, boolean)
- Static method in class baobab.bio.permutation.
PermutationUtil
Make a new permutation, by reverting the permutation between the specified positions
revertSigned(int[], int[], int, int, boolean)
- Static method in class baobab.bio.permutation.
PermutationUtil
Make a new permutation, by reverting the permutation between the specified positions
revertToNewPermutation(Point, Point)
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
Make a new permutation, by reverting the permutation between the specified positions
revertToNewPermutation(Point, Point)
- Method in class baobab.bio.permutation.
SignedPermutation
Make a new permutation, by reverting the permutation between the specified positions
revertToNewPermutation(int, int)
- Method in class baobab.bio.permutation.
SignedPermutation
Make a new permutation, by reverting the permutation between the specified positions
revertToNewPermutation(Point, Point)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Make a new permutation, by reverting the permutation between the specified positions
revertUnsigned(int[], int, int, boolean)
- Static method in class baobab.bio.permutation.
PermutationUtil
Make a new permutation, by reverting the permutation between the specified positions
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