All Classes
analyzeSignedPermutation
analyzeStrataTraces
analyzeTraces
analyzeUnsignedPermutation
BlockComparator
calculateReversalDistance
ComplexSignedPermutation
ComplexSignedPermutationReversalFilter
Cycle
CyclePartition
enumerateStrataTraces
enumerateTraces
ExecUtil
getComplexFirstReversals
getFirstOrientedReversals
makeAllReversals
mapPermutation
performReversals
Permutation
PermutationException
PermutationFormatter
PermutationToTrace
PermutationUtil
Point
RandomPermutation
randomPermutations
ReversalBlock
ReversalBlockComparator
SignedComponent
SignedCycle
SignedPermutation
SignedPermutationReversalFilter
SignedReversalBlock
sort
Trace
TraceCoder
TraceComparator
TraceSortedSet
TraceUtil
TraceWidth
TranspositionBlock
UnsignedPermutation