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toIntArray()
- Method in class baobab.bio.permutation.
TranspositionBlock
Gets a representation of the block as an array of int, with size 3, representing its start, middle and end positions
toString()
- Method in class baobab.bio.permutation.
ComplexSignedPermutation
toString()
- Method in class baobab.bio.permutation.
Cycle
toString()
- Method in class baobab.bio.permutation.
CyclePartition
toString()
- Method in class baobab.bio.permutation.
Point
toString()
- Method in class baobab.bio.permutation.
ReversalBlock
toString()
- Method in class baobab.bio.permutation.
SignedComponent
toString()
- Method in class baobab.bio.permutation.
SignedCycle
toString()
- Method in class baobab.bio.permutation.
SignedPermutation
toString()
- Method in class baobab.bio.permutation.
SignedReversalBlock
toString()
- Method in class baobab.bio.permutation.
UnsignedPermutation
toString(int, int)
- Method in class baobab.trace.
Trace
Produces a string representation of a trace
toString(int, int, String[])
- Method in class baobab.trace.
Trace
Produces a string representation of a trace
toString()
- Method in class baobab.trace.
Trace
toString(byte[])
- Static method in class baobab.trace.
TraceUtil
toString(String[])
- Static method in class baobab.trace.
TraceUtil
toString(byte[][])
- Static method in class baobab.trace.
TraceUtil
toString(byte[][][])
- Static method in class baobab.trace.
TraceUtil
toString(BitList)
- Static method in class baobab.trace.
TraceUtil
toString(BitList[])
- Static method in class baobab.trace.
TraceUtil
toString(BitList[][])
- Static method in class baobab.trace.
TraceUtil
Trace
- Class in
baobab.trace
The Trace class represents a trace on 1..elementSize.
Trace(byte[], int)
- Constructor for class baobab.trace.
Trace
Constructs a Trace
Trace(Trace)
- Constructor for class baobab.trace.
Trace
Constructs a Trace, as a clone of a given trace
TraceCoder
- Class in
baobab.trace
The TraceCoder class codifies a trace on 1..elementSize.
TraceComparator
- Class in
baobab.trace
The TraceComparator class represents a comparator of traces
TraceComparator(int, int, int)
- Constructor for class baobab.trace.
TraceComparator
TraceSortedSet
- Class in
baobab.trace
The TraceSortedSet class represents a set of traces on 1..elementSize (all traces have the same number of elements).
TraceSortedSet(int, int, boolean, int, int, int)
- Constructor for class baobab.trace.
TraceSortedSet
TraceUtil
- Class in
baobab.trace
TraceWidth
- Class in
baobab.trace
TraceWidth()
- Constructor for class baobab.trace.
TraceWidth
transpose(int[], int, int, int)
- Static method in class baobab.bio.permutation.
PermutationUtil
Make a new permutation, by transposing blocks at the permutation between the specified positions
transposeToNewPermutation(Point, Point, Point)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Make a new permutation, by transposing the permutation between the specified positions
transposeToNewPermutation(int, int, int)
- Method in class baobab.bio.permutation.
UnsignedPermutation
Make a new permutation, by transposing the permutation between the specified positions
TranspositionBlock
- Class in
baobab.bio.permutation
The TranspositionBlock class represents an elementary block of a permutation, given by its start, middle and end points, which can be used as the breakpoints of a transposition
TranspositionBlock(Permutation, Point, Point, Point)
- Constructor for class baobab.bio.permutation.
TranspositionBlock
Creates a new block
TranspositionBlock(Permutation, int, int, int)
- Constructor for class baobab.bio.permutation.
TranspositionBlock
Creates a new block
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