Uses of Class
baobab.bio.permutation.PermutationException

Packages that use PermutationException
baobab.bio.permutation   
 

Uses of PermutationException in baobab.bio.permutation
 

Methods in baobab.bio.permutation that throw PermutationException
 SignedPermutation ComplexSignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 SignedPermutation SignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 UnsignedPermutation UnsignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 SignedPermutation ComplexSignedPermutation.revert(ReversalBlock block)
          Reverts the specified block of the permutation
 SignedPermutation SignedPermutation.revert(ReversalBlock block)
          Reverts the specified block of the permutation
 UnsignedPermutation UnsignedPermutation.revert(ReversalBlock block)
          Reverts the specified block of the permutation
 SignedPermutation ComplexSignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 SignedPermutation SignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutation UnsignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutation UnsignedPermutation.transposeToNewPermutation(Point start, Point middle, Point end)
          Make a new permutation, by transposing the permutation between the specified positions
 

Constructors in baobab.bio.permutation that throw PermutationException
ReversalBlock(Permutation permutation, Point start, Point end)
          Creates a new block
SignedReversalBlock(SignedPermutation permutation, Point start, Point end)
          Creates a new block
TranspositionBlock(Permutation permutation, Point start, Point middle, Point end)
          Creates a new block