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Hierarchy For All Packages
Package Hierarchies:
baobab.bio.permutation
,
baobab.exec
,
baobab.exec.permutation
,
baobab.exec.trace
,
baobab.trace
Class Hierarchy
java.lang.Object
baobab.exec.permutation.
analyzeSignedPermutation
baobab.exec.trace.
analyzeStrataTraces
baobab.exec.trace.
analyzeTraces
baobab.exec.permutation.
analyzeUnsignedPermutation
baobab.bio.permutation.
BlockComparator
(implements java.util.Comparator<T>)
baobab.exec.permutation.
calculateReversalDistance
baobab.util.CompressibleSortedSet<Element>
baobab.util.FreezableCompressibleSortedSet<Element>
baobab.trace.
TraceSortedSet
baobab.bio.permutation.
Cycle
baobab.bio.permutation.
SignedCycle
baobab.bio.permutation.
CyclePartition
baobab.exec.trace.
enumerateStrataTraces
baobab.exec.trace.
enumerateTraces
baobab.exec.
ExecUtil
baobab.exec.permutation.
getComplexFirstReversals
baobab.exec.permutation.
getFirstOrientedReversals
baobab.exec.permutation.
makeAllReversals
baobab.exec.permutation.
mapPermutation
baobab.exec.permutation.
performReversals
baobab.bio.permutation.
PermutationFormatter
baobab.bio.permutation.
PermutationToTrace
baobab.bio.permutation.
PermutationUtil
baobab.bio.permutation.
Point
(implements java.lang.Comparable<T>)
baobab.bio.permutation.
RandomPermutation
baobab.exec.permutation.
randomPermutations
baobab.bio.permutation.
ReversalBlock
(implements java.lang.Comparable<T>)
baobab.bio.permutation.
SignedReversalBlock
baobab.bio.permutation.
TranspositionBlock
baobab.bio.permutation.
ReversalBlockComparator
(implements java.util.Comparator<T>)
baobab.bio.permutation.
SignedComponent
baobab.bio.permutation.
SignedPermutation
(implements baobab.bio.permutation.
Permutation
)
baobab.bio.permutation.
ComplexSignedPermutation
baobab.bio.permutation.
SignedPermutationReversalFilter
baobab.bio.permutation.
ComplexSignedPermutationReversalFilter
baobab.exec.permutation.
sort
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
baobab.bio.permutation.
PermutationException
baobab.trace.
Trace
(implements baobab.util.Joinable<Other>)
baobab.trace.
TraceCoder
baobab.trace.
TraceComparator
(implements java.util.Comparator<T>)
baobab.trace.
TraceUtil
baobab.trace.
TraceWidth
baobab.bio.permutation.
UnsignedPermutation
(implements baobab.bio.permutation.
Permutation
)
Interface Hierarchy
baobab.bio.permutation.
Permutation
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