|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use SignedReversalBlock | |
---|---|
baobab.bio.permutation |
Uses of SignedReversalBlock in baobab.bio.permutation |
---|
Methods in baobab.bio.permutation that return SignedReversalBlock | |
---|---|
SignedReversalBlock |
SignedPermutationReversalFilter.getFirstShortestReversalStartingAfter(int position)
Gets the first shortest reversal starting after a specific position (inclusive) |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getFirstShortestReversalStartingAfter(int position)
Gets the first shortest reversal starting after a specific position (inclusive) |
SignedReversalBlock |
SignedPermutationReversalFilter.getLastLongestReversalStartingAfter(int position)
Gets the last longest reversal starting after a specific position (inclusive) |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getLastLongestReversalStartingAfter(int position)
Gets the last longest reversal starting after a specific position (inclusive) |
SignedReversalBlock |
SignedPermutationReversalFilter.getLongestCycleSplittingReversalStartingAt(int position)
Gets the longest cycle splitting reversal starting exactly at a specific position |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getLongestHurdleCuttingReversalStartingAt(int position)
Gets the longest hurdle cutting reversal starting at a specific position |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getLongestHurdleMergingReversalStartingAt(int position)
Gets the longest hurdle merging reversal starting at a specific position |
SignedReversalBlock |
SignedPermutationReversalFilter.getLongestReversalStartingAt(int position)
Gets the longest reversal starting exactly at a specific position |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getLongestReversalStartingAt(int position)
Gets the longest reversal starting exactly at a specific position |
SignedReversalBlock |
SignedPermutationReversalFilter.getShortestContainerReversalStartingAfter(int position,
Point point)
Gets the shortest reversal block starting after a specific position (inclusive) that contains a given point |
SignedReversalBlock |
ComplexSignedPermutationReversalFilter.getShortestContainerReversalStartingAfter(int position,
Point point)
Gets the shortest reversal block starting after a specific position (inclusive) that contains a given point |
Methods in baobab.bio.permutation that return types with arguments of type SignedReversalBlock | |
---|---|
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getContainerReversalsStartingAfter(int position,
Point point)
Gets the reversals starting after a specific position (inclusive) which contain a given point |
java.util.TreeSet<SignedReversalBlock> |
SignedPermutationReversalFilter.getCycleSplittingReversalsBetweenIntervals(int[] interval1,
int[] interval2)
Gets the list of cycle splitting reversals of this permutation which start within the first given interval and end within the second given interval |
java.util.TreeSet<SignedReversalBlock> |
SignedPermutationReversalFilter.getCycleSplittingReversalsStartingAt(int position)
Gets the list of cycle splitting reversals starting exactly at a specific position |
java.util.TreeSet<SignedReversalBlock> |
SignedPermutationReversalFilter.getCycleSplittingReversalsWithinIntervals(java.util.Vector<int[]> intervals)
Gets the list of proper reversals of this permutation within the given intervals |
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getHurdleCuttingReversals()
Gets the list of hurdle cutting reversals |
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getHurdleCuttingReversalsBetweenIntervals(int[] interval1,
int[] interval2)
Gets the list of hurdle cutting reversals of this permutation which start within the first given interval and end within the second given interval |
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getHurdleCuttingReversalsStartingAt(int position)
Gets the list of hurdle cutting reversals starting exactly at a specific position |
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getHurdleCuttingReversalsWithinIntervals(java.util.Vector intervals)
Gets the list of hurdle cutting reversals of this permutation within the given intervals |
java.util.TreeSet<SignedReversalBlock> |
SignedPermutationReversalFilter.getReversalsStartingAt(int position)
Gets the reversals starting exactly at a specific position |
java.util.TreeSet<SignedReversalBlock> |
ComplexSignedPermutationReversalFilter.getReversalsStartingAt(int position)
Gets the reversals starting exactly at a specific position |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |