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S

setDebugElementData(int[]) - Method in class baobab.trace.Trace
 
setSolutionsByHeight(long[]) - Method in class baobab.trace.TraceSortedSet
 
setSuperHurdle() - Method in class baobab.bio.permutation.SignedComponent
Sets this component as super hurdle
setTracesByHeight(int[]) - Method in class baobab.trace.TraceSortedSet
 
setTracesByWidth(int[]) - Method in class baobab.trace.TraceSortedSet
 
SignedComponent - Class in baobab.bio.permutation
The SignedComponent class represents a component of signed cycles of a signed permutation
SignedCycle - Class in baobab.bio.permutation
The SignedCycle class represents a cycle of points of a signed permutation
SignedPermutation - Class in baobab.bio.permutation
The SignedPermutation class represents a signed permutation (the SignedPermutation class does not deal with hurdles)
SignedPermutation(int[]) - Constructor for class baobab.bio.permutation.SignedPermutation
Creates a new linear permutation (assumes the identity permutation as target)
SignedPermutation(int[], boolean) - Constructor for class baobab.bio.permutation.SignedPermutation
Creates a new permutation (assumes the identity permutation as target)
SignedPermutation(int[], int[]) - Constructor for class baobab.bio.permutation.SignedPermutation
Creates a new linear permutation
SignedPermutation(int[], int[], boolean) - Constructor for class baobab.bio.permutation.SignedPermutation
Creates a new permutation
SignedPermutation(Vector<String>, Vector<String>, boolean) - Constructor for class baobab.bio.permutation.SignedPermutation
Creates a new permutation
SignedPermutationReversalFilter - Class in baobab.bio.permutation
The SignedPermutationReversalFilter filters valid reversal blocks for a SignedPermutation
SignedReversalBlock - Class in baobab.bio.permutation
The SignedReversalBlock class represents an elementary block of a signed permutation, given by its start and end points, which can be used as the breakpoints of a signed reversal
SignedReversalBlock(SignedPermutation, Point, Point) - Constructor for class baobab.bio.permutation.SignedReversalBlock
Creates a new block
SignedReversalBlock(SignedPermutation, int, int) - Constructor for class baobab.bio.permutation.SignedReversalBlock
Creates a new block
size() - Method in class baobab.bio.permutation.Cycle
Gets the number of points in this cycle
size() - Method in class baobab.bio.permutation.CyclePartition
Gets the size (number of points) of this partition
size() - Method in interface baobab.bio.permutation.Permutation
 
size() - Method in class baobab.bio.permutation.SignedPermutation
Gets the size (or the number of elements) of the permutation
size() - Method in class baobab.bio.permutation.UnsignedPermutation
Gets the size (or the number of elements) of the permutation
sort - Class in baobab.exec.permutation
 
sort() - Constructor for class baobab.exec.permutation.sort
 
split(Trace) - Method in class baobab.trace.Trace
 
SPLIT_CYCLE - Static variable in class baobab.bio.permutation.SignedReversalBlock
 

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