Uses of Class
baobab.bio.permutation.Point

Uses of Point in baobab.bio.permutation
 

Methods in baobab.bio.permutation that return Point
 Point CyclePartition.firstPoint()
           
 Point SignedComponent.getEndPoint()
          Gets the end point of this component in the permutation
 Point SignedPermutation.getEndPoint()
          Gets the end point of the permutation
 Point Cycle.getEndPoint()
          Gets the end point of this cycle in the permutation
 Point UnsignedPermutation.getEndPoint()
          Gets the end point of the permutation
 Point SignedCycle.getEndPoint()
          Gets the end point of this cycle in the permutation
 Point[] Point.getNeighbors()
          Gets the neighbors of this point in the permutation
 Point Point.getNextPoint()
           
 Point Permutation.getPointAt(int pos)
          Gets a point at a specific position of the permutation
 Point SignedPermutation.getPointAt(int pos)
          Gets a point at a specific position of the permutation
 Point UnsignedPermutation.getPointAt(int pos)
          Gets a point at a specific position of the permutation
 Point Point.getPreviousPoint()
           
 Point SignedComponent.getStartPoint()
          Gets the start point of this component in the permutation
 Point SignedPermutation.getStartPoint()
          Gets the start point of the permutation
 Point Cycle.getStartPoint()
          Gets the start point of this cycle in the permutation
 Point UnsignedPermutation.getStartPoint()
          Gets the start point of the permutation
 Point SignedCycle.getStartPoint()
          Gets the start point of this cycle in the permutation
 Point CyclePartition.lastPoint()
           
 

Methods in baobab.bio.permutation that return types with arguments of type Point
 java.util.SortedSet<Point> Cycle.getBreakpoints()
          Gets the breakpoint list of this cycle
 java.util.SortedSet<Point> CyclePartition.getPoints()
          Gets the list of points of this cycle partition
 java.util.SortedSet<Point> Cycle.getPoints()
          Gets the points of this cycle sorted in ascendant order
 java.util.Iterator<Point> Cycle.getPointsAsCycle()
          Gets the points of this cycle ordered as a cycle
 

Methods in baobab.bio.permutation with parameters of type Point
 boolean Point.isNeighborOf(Point point)
          Tests whether this point is a neighbor of a given point
 SignedPermutation SignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 UnsignedPermutation UnsignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 SignedPermutation ComplexSignedPermutation.revert(Point start, Point end)
          Reverts the permutation between the specified points
 SignedPermutation SignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutation UnsignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 SignedPermutation ComplexSignedPermutation.revertToNewPermutation(Point start, Point end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutation UnsignedPermutation.transposeToNewPermutation(Point start, Point middle, Point end)
          Make a new permutation, by transposing the permutation between the specified positions