Uses of Package
baobab.bio.permutation

Classes in baobab.bio.permutation used by baobab.bio.permutation
ComplexSignedPermutation
          The ComplexSignedPermutation class represents a signed permutation (the ComplexSignedPermutation class deals with hurdles)
Cycle
          The Cycle class represents a cycle of points of the breakpoint graph of a permutation
CyclePartition
          The CyclePartition class represents a partition of a cycle of the breakpoint graph of a permutation Each cycle for a signed permutation has two partitions.
Permutation
          The Permutation interface represents a general permutation
PermutationException
          The PermutationException class represents an exception on permutation dealing
PermutationFormatter
          The PermutationFormatter class transforms a permutation to formatted strings
Point
          The Point class represents a point between two values of a permutation
SignedComponent
          The SignedComponent class represents a component of signed cycles of a signed permutation
SignedPermutation
          The SignedPermutation class represents a signed permutation and its brekpoint graph (the SignedPermutation class does not deal with hurdles)
SignedPermutationReversalFilter
          The SignedPermutationReversalFilter filters valid reversal blocks for a SignedPermutation
UnsignedPermutation
          The UnsignedPermutation class represents an unsigned permutation and its breakpoint graph