Uses of Class
baobab.bio.permutation.UnsignedPermutationBPGraph

Packages that use UnsignedPermutationBPGraph
baobab.bio.permutation   
 

Uses of UnsignedPermutationBPGraph in baobab.bio.permutation
 

Methods in baobab.bio.permutation that return UnsignedPermutationBPGraph
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revert(BPGraphPoint start, BPGraphPoint end)
          Reverts the permutation between the specified points
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revert(BPGraphReversalBlock block)
          Reverts the specified block of the permutation
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revert(int start, int end)
          Reverts the permutation between the specified positions
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revertToNewPermutation(BPGraphPoint start, BPGraphPoint end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.transposeToNewPermutation(BPGraphPoint start, BPGraphPoint middle, BPGraphPoint end)
          Make a new permutation, by transposing the permutation between the specified positions
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.transposeToNewPermutation(int start, int middle, int end)
          Make a new permutation, by transposing the permutation between the specified positions
 

Methods in baobab.bio.permutation with parameters of type UnsignedPermutationBPGraph
 boolean UnsignedPermutationBPGraph.equals(UnsignedPermutationBPGraph perm)