baobab.applogic.strata
Class StrataAppLogicUtil

java.lang.Object
  extended by baobab.applogic.AppLogicUtil
      extended by baobab.applogic.strata.StrataAppLogicUtil

public class StrataAppLogicUtil
extends AppLogicUtil


Field Summary
 
Fields inherited from class baobab.applogic.AppLogicUtil
WORK_DIR
 
Constructor Summary
StrataAppLogicUtil(java.lang.String outputDir, java.lang.String permutation, java.lang.String permutationId)
           
 
Method Summary
 void close()
           
 StrataSortedSet enumerateStrata(SignedPermutationBPGraph permutation, int reversalDistance, int strataNum)
           
 
Methods inherited from class baobab.applogic.AppLogicUtil
applyAllReversals, countAllSortingSequences, log
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

StrataAppLogicUtil

public StrataAppLogicUtil(java.lang.String outputDir,
                          java.lang.String permutation,
                          java.lang.String permutationId)
Method Detail

close

public void close()
Overrides:
close in class AppLogicUtil

enumerateStrata

public StrataSortedSet enumerateStrata(SignedPermutationBPGraph permutation,
                                       int reversalDistance,
                                       int strataNum)