Uses of Class
baobab.bio.permutation.StrataReversalConstraint

Packages that use StrataReversalConstraint
baobab.applogic.trace   
baobab.applogic.trace.benchmark   
 

Uses of StrataReversalConstraint in baobab.applogic.trace
 

Methods in baobab.applogic.trace with parameters of type StrataReversalConstraint
 TraceSortedSet TraceAppLogicUtil.analyzeTraces(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 

Uses of StrataReversalConstraint in baobab.applogic.trace.benchmark
 

Methods in baobab.applogic.trace.benchmark with parameters of type StrataReversalConstraint
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark0(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark1(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark2(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)