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Packages that use ComplexSignedPermutationBPGraph | |
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baobab.applogic.trace | |
baobab.bio.permutation |
Uses of ComplexSignedPermutationBPGraph in baobab.applogic.trace |
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Methods in baobab.applogic.trace with parameters of type ComplexSignedPermutationBPGraph | |
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TraceSortedSet |
TraceAppLogicUtil.analyzeDecomposedTraces(ComplexSignedPermutationBPGraph permutation,
int reversalDistance,
boolean removePrevious,
int baseStep,
int prevSize,
boolean isFragmented,
int x,
int y,
int z,
java.lang.String thisWorkDir,
int[] decompose,
int maxNonPerfectReversalScore,
boolean doProgressiveDetection,
TerminusSymmetryReversalConstraint symmetry)
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Uses of ComplexSignedPermutationBPGraph in baobab.bio.permutation |
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Methods in baobab.bio.permutation that return types with arguments of type ComplexSignedPermutationBPGraph | |
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java.util.TreeSet<ComplexSignedPermutationBPGraph> |
ComplexSignedPermutationBPGraph.decompose()
Decompose this graph in its components + adajacencies to replace other components |
Methods in baobab.bio.permutation with parameters of type ComplexSignedPermutationBPGraph | |
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boolean |
ComplexSignedPermutationBPGraph.equals(ComplexSignedPermutationBPGraph perm)
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