|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use PermutationBPGraph | |
---|---|
baobab.bio.permutation |
Uses of PermutationBPGraph in baobab.bio.permutation |
---|
Classes in baobab.bio.permutation that implement PermutationBPGraph | |
---|---|
class |
ComplexSignedPermutationBPGraph
The ComplexSignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the ComplexSignedPermutationBPGraph class deals with hurdles) |
class |
SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
class |
UnsignedPermutationBPGraph
The UnsignedPermutationBPGraph class represents an unsigned permutation pair and its breakpoint graph |
class |
WeightedSignedPermutationBPGraph
The WeightedSignedPermutationBPGraph class represents a weighted signed permutation pair and its breakpoint graph (the WeightedSignedPermutationBPGraph class does not deal with hurdles) |
Methods in baobab.bio.permutation that return PermutationBPGraph | |
---|---|
PermutationBPGraph |
PermutationBPGraphIntervalFilter.getPermutation()
|
PermutationBPGraph |
PermutationBPGraphFormatter.getPermutation()
|
PermutationBPGraph |
SignedPermutationBPGraph.getPermutationBPGraph()
Gets this permutation |
PermutationBPGraph |
UnsignedPermutationBPGraph.getPermutationBPGraph()
Gets this permutation |
Methods in baobab.bio.permutation with parameters of type PermutationBPGraph | |
---|---|
static BitList |
IntervalUtil.boundariesToList(PermutationBPGraph permutation,
int start,
int end)
Generates a BitList from an interval |
static int[] |
IntervalUtil.boundariesToSortedList(PermutationBPGraph permutation,
int start,
int end)
Generates a TraceElement from a reversal |
static int[] |
IntervalUtil.boundariesToUnsortedList(PermutationBPGraph permutation,
int start,
int end)
|
static int[] |
IntervalUtil.listToBoundaries(PermutationBPGraph permutation,
BitList segment)
Generates a reversal from a trace element |
static int[] |
IntervalUtil.listToBoundaries(PermutationBPGraph permutation,
int[] segment)
|
Constructors in baobab.bio.permutation with parameters of type PermutationBPGraph | |
---|---|
BPGraphReversalBlock(PermutationBPGraph permutation,
BPGraphPoint start,
BPGraphPoint end)
Creates a new block |
|
BPGraphReversalBlock(PermutationBPGraph permutation,
int start,
int end)
Creates a new block |
|
BPGraphTranspositionBlock(PermutationBPGraph permutation,
BPGraphPoint start,
BPGraphPoint middle,
BPGraphPoint end)
Creates a new block |
|
BPGraphTranspositionBlock(PermutationBPGraph permutation,
int start,
int middle,
int end)
Creates a new block |
|
PermutationBPGraphIntervalFilter(PermutationBPGraph permutation)
|
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |