Uses of Class
baobab.bio.permutation.TerminusSymmetryReversalConstraint

Packages that use TerminusSymmetryReversalConstraint
baobab.applogic.trace   
baobab.applogic.trace.benchmark   
 

Uses of TerminusSymmetryReversalConstraint in baobab.applogic.trace
 

Methods in baobab.applogic.trace with parameters of type TerminusSymmetryReversalConstraint
 TraceSortedSet TraceAppLogicUtil.analyzeDecomposedTraces(ComplexSignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, java.lang.String thisWorkDir, int[] decompose, int maxNonPerfectReversalScore, boolean doProgressiveDetection, TerminusSymmetryReversalConstraint symmetry)
           
 TraceSortedSet TraceAppLogicUtil.analyzeTraces(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 

Uses of TerminusSymmetryReversalConstraint in baobab.applogic.trace.benchmark
 

Methods in baobab.applogic.trace.benchmark with parameters of type TerminusSymmetryReversalConstraint
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark0(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark1(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark2(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)