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L

last() - Method in class baobab.bio.permutation.colinearity.LinkPermutationToColinearBlock
 
lastElement() - Method in class baobab.util.CompressibleSortedSet
Gets the last element in this set
lastElement() - Method in class baobab.util.FreezableCompressibleSortedSet
Gets the last element in this set
lastPoint() - Method in class baobab.bio.permutation.BPGraphCyclePartition
 
length() - Method in class baobab.bio.permutation.BPGraphReversalBlock
Gets the length of the block (the number of values of the permutation between its start and end points)
length() - Method in class baobab.util.BitList
 
linearAssignement(int[][], int[], int) - Static method in class baobab.trace.TraceWidth
 
LinkPermutationToColinearBlock - Class in baobab.bio.permutation.colinearity
 
LinkPermutationToColinearBlock(ColinearBlock, ColinearPermutation, int, int, boolean) - Constructor for class baobab.bio.permutation.colinearity.LinkPermutationToColinearBlock
 
listAsCondensedString(BitList, String[], char, boolean) - Static method in class baobab.util.Util
 
listAsCondensedString(BitList, String[], Hashtable<String, TreeSet<String>>, char, boolean) - Static method in class baobab.util.Util
 
listAsCondensedString(BitList, int, char) - Static method in class baobab.util.Util
 
listBreakpoints - Class in baobab.exec.permutation
 
listBreakpoints() - Constructor for class baobab.exec.permutation.listBreakpoints
 
listBreakpointsByName - Class in baobab.exec.permutation
 
listBreakpointsByName() - Constructor for class baobab.exec.permutation.listBreakpointsByName
 
listToBoundaries(int[], boolean, int[]) - Static method in class baobab.bio.permutation.IntervalUtil
 
listToBoundaries(PermutationBPGraph, int[]) - Static method in class baobab.bio.permutation.IntervalUtil
 
listToBoundaries(PermutationBPGraph, BitList) - Static method in class baobab.bio.permutation.IntervalUtil
Generates a reversal from a trace element
locateCoorientedIntervals - Class in baobab.exec.permutation
 
locateCoorientedIntervals() - Constructor for class baobab.exec.permutation.locateCoorientedIntervals
 
locateStrata - Class in baobab.exec.strata
 
locateStrata() - Constructor for class baobab.exec.strata.locateStrata
 
log(String) - Method in class baobab.applogic.AppLogicUtil
 
LONG_TO_BYTES - Static variable in class baobab.util.Bytes
 

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