Uses of Class
baobab.bio.permutation.PerfectReversalConstraint

Packages that use PerfectReversalConstraint
baobab.applogic.trace   
baobab.applogic.trace.benchmark   
 

Uses of PerfectReversalConstraint in baobab.applogic.trace
 

Methods in baobab.applogic.trace with parameters of type PerfectReversalConstraint
 TraceSortedSet TraceAppLogicUtil.analyzeTraces(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 

Uses of PerfectReversalConstraint in baobab.applogic.trace.benchmark
 

Methods in baobab.applogic.trace.benchmark with parameters of type PerfectReversalConstraint
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark0(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark1(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 void BenchmarkTraceAppLogicUtil.analyzeTracesBenchmark2(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)