Uses of Class
baobab.trace.TraceSortedSet

Packages that use TraceSortedSet
baobab.applogic.trace   
baobab.trace   
 

Uses of TraceSortedSet in baobab.applogic.trace
 

Methods in baobab.applogic.trace that return TraceSortedSet
 TraceSortedSet TraceAppLogicUtil.analyzeDecomposedTraces(ComplexSignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, java.lang.String thisWorkDir, int[] decompose, int maxNonPerfectReversalScore, boolean doProgressiveDetection, TerminusSymmetryReversalConstraint symmetry)
           
 TraceSortedSet TraceAppLogicUtil.analyzeTraces(SignedPermutationBPGraph permutation, int reversalDistance, boolean removePrevious, int baseStep, int prevSize, boolean isFragmented, int x, int y, int z, PerfectReversalConstraint perfectConstraint, TerminusSymmetryReversalConstraint symmetryConstraint, StrataReversalConstraint strataConstraint)
           
 TraceSortedSet TraceAppLogicUtil.enumerateTraces(SignedPermutationBPGraph permutation, int reversalDistance, int x, int y, int z, int[] strata)
           
 TraceSortedSet TraceAppLogicUtil.readCodedTraces(int elementSize, int numberOfElements, int numberOfConstraints, int x, int y, int z)
           
 TraceSortedSet TraceAppLogicUtil.readTraces(SignedPermutationBPGraph permutation, int numberOfElements, boolean isSubTrace, int x, int y, int z)
           
 

Methods in baobab.applogic.trace with parameters of type TraceSortedSet
 void TraceAppLogicUtil.diffTraces(int numberOfElements, int elementSize, boolean isSubTrace, TraceSortedSet big, java.lang.String smallSuffix, java.lang.String diffSuffix)
           
 

Uses of TraceSortedSet in baobab.trace
 

Subclasses of TraceSortedSet in baobab.trace
 class SubTraceSortedSet
          The SubTraceSortedSet class represents a sorted set of subtraces (all subtraces have the same number of elements).