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Packages that use baobab.bio.permutation | |
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baobab.applogic | |
baobab.applogic.strata | |
baobab.applogic.trace | |
baobab.applogic.trace.benchmark | |
baobab.bio.permutation |
Classes in baobab.bio.permutation used by baobab.applogic | |
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SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
Classes in baobab.bio.permutation used by baobab.applogic.strata | |
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SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
Classes in baobab.bio.permutation used by baobab.applogic.trace | |
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ComplexSignedPermutationBPGraph
The ComplexSignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the ComplexSignedPermutationBPGraph class deals with hurdles) |
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PerfectReversalConstraint
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SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
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StrataReversalConstraint
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TerminusSymmetryReversalConstraint
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Classes in baobab.bio.permutation used by baobab.applogic.trace.benchmark | |
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PerfectReversalConstraint
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SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
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StrataReversalConstraint
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TerminusSymmetryReversalConstraint
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Classes in baobab.bio.permutation used by baobab.bio.permutation | |
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BPGraphCycle
The BPGraphCycle class represents a cycle of points of a permutation breakpoint graph |
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BPGraphCyclePartition
The BPGraphCyclePartition class represents a partition of a cycle of a breakpoint graph |
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BPGraphPoint
The BPGraphPoint class represents a point between two values of a permutation (and dark edges in the corresponding breakpoint graph) |
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BPGraphReversalBlock
The BPGraphReversalBlock class represents an elementary block of a permutation given by its start and end points, which can be used as the breakpoints of a reversal |
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ComplexSignedPermutationBPGraph
The ComplexSignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the ComplexSignedPermutationBPGraph class deals with hurdles) |
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PermutationBPGraph
The PermutationBPGraph interface represents a general permutation pair and its breakpoint graph |
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PermutationBPGraphFormatter
The PermutationBPGraphFormatter class gives a text representation of a breakpoint graph |
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PermutationException
The PermutationException class represents an exception when dealing with permutations |
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ReversalConstraint
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SignedBPGraphComponent
The SignedBPGraphComponent class represents a component of signed cycles of the breakpoint graph of a signed permutation pair |
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SignedBPGraphReversalBlock
The SignedBPGraphReversalBlock class represents an elementary block of a signed permutation, given by its start and end points, which can be used as the breakpoints of a signed reversal |
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SignedPermutationBPGraph
The SignedPermutationBPGraph class represents a signed permutation pair and its breakpoint graph (the SignedPermutationBPGraph class does not deal with hurdles) |
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SignedPermutationBPGraphReversalFilter
The SignedPermutationBPGraphReversalFilter filters valid reversal blocks for a SignedPermutationBPGraph |
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UnsignedPermutationBPGraph
The UnsignedPermutationBPGraph class represents an unsigned permutation pair and its breakpoint graph |
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