Uses of Class
baobab.bio.permutation.PermutationException

Packages that use PermutationException
baobab.bio.permutation   
 

Uses of PermutationException in baobab.bio.permutation
 

Methods in baobab.bio.permutation that throw PermutationException
 SignedPermutationBPGraph ComplexSignedPermutationBPGraph.revert(BPGraphPoint start, BPGraphPoint end)
          Reverts the permutation between the specified points
 SignedPermutationBPGraph SignedPermutationBPGraph.revert(BPGraphPoint start, BPGraphPoint end)
          Reverts the permutation between the specified points
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revert(BPGraphPoint start, BPGraphPoint end)
          Reverts the permutation between the specified points
 SignedPermutationBPGraph ComplexSignedPermutationBPGraph.revert(BPGraphReversalBlock block)
          Reverts the specified block of the permutation
 SignedPermutationBPGraph SignedPermutationBPGraph.revert(BPGraphReversalBlock block)
          Reverts the specified block of the permutation
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revert(BPGraphReversalBlock block)
          Reverts the specified block of the permutation
 SignedPermutationBPGraph ComplexSignedPermutationBPGraph.revertToNewPermutation(BPGraphPoint start, BPGraphPoint end)
          Make a new permutation, by reverting the permutation between the specified positions
 SignedPermutationBPGraph SignedPermutationBPGraph.revertToNewPermutation(BPGraphPoint start, BPGraphPoint end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.revertToNewPermutation(BPGraphPoint start, BPGraphPoint end)
          Make a new permutation, by reverting the permutation between the specified positions
 UnsignedPermutationBPGraph UnsignedPermutationBPGraph.transposeToNewPermutation(BPGraphPoint start, BPGraphPoint middle, BPGraphPoint end)
          Make a new permutation, by transposing the permutation between the specified positions
 

Constructors in baobab.bio.permutation that throw PermutationException
BPGraphReversalBlock(PermutationBPGraph permutation, BPGraphPoint start, BPGraphPoint end)
          Creates a new block
BPGraphTranspositionBlock(PermutationBPGraph permutation, BPGraphPoint start, BPGraphPoint middle, BPGraphPoint end)
          Creates a new block
SignedBPGraphReversalBlock(SignedPermutationBPGraph permutation, BPGraphPoint start, BPGraphPoint end)
          Creates a new block