Databases Available for BLAST Searches
Nucleotide sequence databases
- Genbank
- All GenBank sequences except ESTs, HTGs and GSSs (see current release).
- EST
- Sequences from GenBank EST divisions (EST = expressed sequence tag) (see current release).
- HTG
- Sequences from GenBank HTG divisions (HTG = high throughput genome sequences = draft genomic sequences) (see current release).
- GSS
- Sequences from GenBank GSS divisions (GSS = genome survey sequence) (see current release).
- rRNA
- Ribosomal RNA emsequences described in GenBank annotations (see current release).
Protein sequence databases
- Genbank_prot
- GenBank protein-coding sequences translations (see current release).
- sptrembl
- Non-redundant compilation of SWISS-PROT/TrEMBL (see current release).
- Human
- Human protein sequences from SWISS-PROT/TrEMBL (see current release).